Hi Kunal,
There is an option in vendor master in With/tax information Liable remove the Tick and Try to post it will not calculate any TDS from the invoice/ Payment once post done then reassign the tick in liable check box it will start calculating the TDS from the Invoice/Payment from next invoice
Hope this will help to solve your issue either u can do through Manual or as i mentioned above this two option are there kindly check and confirm for the same
Thanks & Regards
Trinath Gujari